Update bx-python to 0.15.1 - #68558
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`setup.py` shipped Cython-generated .c/.h files in the sdist, produced at release time with whatever NumPy/Cython happened to be newest. Since the old `Cython.Distutils.build_ext` only re-cythonized when the .pyx was newer than the shipped .c, downstream builders (e.g. bioconda) compiled that stale .c as-is against their own, often older, NumPy headers, causing "implicit declaration" errors for `PyDataType_*` functions, see: bioconda/bioconda-recipes#68558 Replace this with an explicit `cythonize(ext_modules, force=True)` call in `setup.py`, so every real build always regenerates C sources fresh against whatever NumPy/Cython is actually installed. NumPy and Cython are both already hard build-time requirements (`build-system.requires` in `pyproject.toml`), so drop the now-pointless `ImportError` fallback and merge their imports. With sources always regenerated, there's no need to ship the generated .c/.h files in the sdist either: trim `MANIFEST.in` to just the .pyx/.pxd sources plus the one genuinely hand-written .c/.h pair (`lib/bx/align/sitemask/find_cpg.*`), and skip building ext_modules for the "sdist" action so setuptools doesn't pull the freshly cythonized files back in as extension sources. Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
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bx-python: 0.14.0 → 0.15.1recipes/bx-python(click to view/edit other files)This pull request was automatically generated (see docs).